projects
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projects [2011/09/03 21:14] – dymond | projects [2015/08/11 20:43] – jarek | ||
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- | ====== | + | ====== |
- | (Listed in order received.) | + | \\ |
- | ====== Building an autonomous motorboat ====== | + | ===Genome-wide identification of plant micro RNAs=== |
- | **Supervisor**: | ||
- | **Required Background**: General CSE408x prerequisites | + | **Supervisor: Katalin Hudak** |
- | **Recommended Background**: | ||
- | __Description__ | + | The Hudak Lab in the Biology Department has an opening |
- | An opportunity exists | + | |
+ | Working with the support of a PhD student, your project will involve: | ||
+ | 1) Prediction of micro RNA (miRNA) targets on the basis of complementary sequence matches | ||
- | ---- | + | 2) Correlation of miRNA and mRNA expression changes to identify genes that are regulated by miRNAs |
- | : | + | |
- | ---- | + | |
- | ====== Athenians Data Project ====== | + | 3) Conducting pathway analysis to determine which biological processes are controlled by miRNAs |
- | **Supervisor**: | + | 4) Construction of a miRNA/ |
+ | This work will contribute to a scientific manuscript on miRNA-mediated gene regulation in pokeweed during response to JA. | ||
- | **Required Background**: General CSE408x prerequisites | + | Requirements: |
- | **Recommended Background**: | + | 1) Pre-requisites as per EECS Calendar |
- | __Description__ | + | 2) Facility with script-writing/modification (in Perl or Python) |
- | The Athenians Project is a multi-year, ongoing project of compiling, computerizing and studying data about the persons of ancient Athens. | + | |
- | Possible project ideas for this term span from simpler ones such as | + | |
- | how to present data in the best possible way, add spatial characteristics to existing data, | + | |
- | add multimedia data, improve text searching, etc. to more complex ideas such as filling | + | |
- | missing parts for the " | + | |
- | words has been done in the past using expert knowledge. Those experts have establish | + | |
- | certain rules/guidelines that may be possible to extrapolate | + | |
- | when talking in IT terminology. Furthermore, | + | |
- | the database with some likelihood. Associating probabilities with hypotheses introduces | + | |
- | another opportunity for research projects. | + | |
- | ---- | + | |
- | : | + | |
- | ---- | + | |
- | ====== Three-Dimensional Context from Linear Perspective | + | 3) Preference |
- | **Supervisor**: | + | 4) Able to begin in September 2015 |
- | **Requirements**: Good facility with applied mathematics | + | Learning outcomes: |
- | __Description__ | + | 1) Manipulate and analyze quantitative biological data |
- | To provide visual surveillance over a large environment, | + | 2) Develop |
- | This problem can be addressed by automatically pre-mapping two-dimensional surveillance video data into three-dimensional coordinates. | + | 3) Manage a CentOS computer server to store and facilitate ongoing research |
- | Mapping surveillance video to three-dimensional coordinates requires construction | + | No knowledge |
- | This project will investigate a monocular method for inferring three-dimensional context for video surveillance. | + | For more information, please see: |
+ | Hudak Lab website- http:// | ||
- | Although the Manhattan world assumption provides powerful constraints, | + | RNA sequencing- http://www.illumina.com/ |
- | The student will work closely with graduate students and postdoctoral fellows at York University, as well as researchers at other institutions involved in the project. The student will develop skills in using MATLAB, a very useful mathematical programming environment, | + | miRNAs- http://en.wikipedia.org/ |
- | For more information on the laboratory: [[http:// | + | \\ |
- | ---- | ||
- | : | ||
- | ---- | ||
- | ====== Estimating Pedestrian | + | ===Dynamic Interface Detection |
- | **Supervisor**: James Elder | + | **Supervisor: Michael Jenkin** |
- | **Requirements**: | ||
- | __Description__ | + | Contrary to most industries, fine chemical manufacturing is dominated by batch production methods. Increasing economic, environmental and safety pressures are motivating a turn towards continuous synthesis. Rather than making products in one big flask, continuous synthesis involves performing chemical reactions by flowing reagents through a tube. Working in this way provides more control over the reaction parameters leading to increases in product quality, and process efficiency and safety. The flow chemistry industry for fine chemical production is a relatively new but burgeoning field with a projected market capacity of billions of dollars by 2018. |
- | Facilities planning at both city (e.g., Toronto) | + | Extraction of the reaction mixture for purification |
- | The density of permanent urban video surveillance camera installations has increased dramatically over the last several years. These systems provide | + | A key step in the process takes place in a clear tube that is mounted vertically. The tube contains two fluids with a boundary between them. During the process material flows into and out of the tube from the top and the bottom. Chemical reactions take place within this tube and It is essential that the position of the boundary |
- | This project will explore the use of computer vision algorithms for the automatic estimation of pedestrian | + | One way of solving this problem is to float a marker at the boundary between the two liquids |
- | The student will work closely with graduate students and postdoctoral fellows at York University, as well as researchers at other institutions involved in the project. The student will develop skills in using MATLAB, a very useful mathematical programming environment, | + | Specific goals of the project |
- | For more information | + | - Develop a computer vision system that can detect and monitor the interface between two miscible fluids of different density. |
+ | |||
+ | - Evaluate the performance of the system over a range of different (and typical) fluids | ||
+ | |||
+ | - Explore the use of different illuminant/ | ||
+ | |||
+ | The successful candidate(s) will have the experience of working with a diverse group of scientists and engineers toward the design and implementation of an automated liquid extraction device with applications across many industries. Upon successful prototyping, | ||
+ | |||
+ | For further information please contact, | ||
+ | |||
+ | Michael Jenkin (jenkin@cse.yorku.ca) or Michal Organ (organ@yorku.ca) | ||
+ | |||
+ | \\ | ||
+ | ====== DDoS Attack using Google-bots ====== | ||
+ | |||
+ | **Supervisor**: Ntalija Vlajic | ||
+ | |||
+ | **Recommended Background**: CSE 3213 or CSE 3214, CSE 3482 | ||
+ | |||
+ | Not long ago, botnets - networks of compromised computers - were seen as | ||
+ | the most effective (if not the only) means of conducting Distributed Denial | ||
+ | of Service (DDoS) attacks. However, with the growing popularity and prevalence | ||
+ | of application-layer over other types of DDoS attacks, the DDoS execution | ||
+ | landscape is becoming increasingly more diverse. An especially interesting | ||
+ | new trend is the execution of application-layer DDoS attacks by means of | ||
+ | skillfully manipulated Web-crawlers, | ||
+ | The goal of this project is to design, implement and test a real-world | ||
+ | framework consisting of the following: a) the attacker' | ||
+ | domain specially designed to attract Google-bots and then manipulate them | ||
+ | into generating attack traffic towards the target/victim site; b) the | ||
+ | victim' | ||
+ | component, the project will also look into the statistical/numerical | ||
+ | estimation of the framework' | ||
+ | to an actual (real-world) target/ | ||
+ | |||
+ | |||
+ | |||
+ | |||
+ | \\ | ||
+ | ====== Attentive Sensing for Better Two-Way Communication in Remote Learning Environments ====== | ||
+ | |||
+ | **Supervisor**: | ||
+ | |||
+ | **Required Background**: | ||
+ | good math skills, knowledge of C and MATLAB programming languages | ||
+ | |||
+ | One of the challenges in remote learning is to allow students to communicate effectively with the lecturer. For example, when a student asks a question, communication will be more effective if the instructor has a zoomed view of the student’s face, so that s/he can interpret expressions etc. | ||
- | ---- | + | The goal of this project is to apply attentive sensing technology (www.elderlab.yorku.ca) to this problem. |
- | : | + | |
- | ---- | + | In particular, working with a senior graduate student or postdoctoral fellow, the successful applicant will: |
+ | |||
+ | | ||
+ | | ||
+ | - Evaluate these algorithms in a real-classroom setting, using proprietary attentive sensing technology | ||
+ | |||
+ | |||
+ | ====== Attentive Sensing for Sport Video Recording Markets ====== | ||
+ | |||
+ | **Supervisor**: James Elder | ||
+ | |||
+ | **Required Background**: | ||
+ | |||
+ | |||
+ | The goal of this project is to modify York University’s patented attentive sensor technology to the sport video recording market. | ||
+ | |||
+ | The general problem is to use attentive sensing technology (www.elderlab.yorku.ca) to visually detect and track multiple moving agents (e.g., skiers, riders, horses) and to select specific agents for active high-resolution smooth pursuit. | ||
+ | |||
+ | The student will work with senior graduate students, postdoctoral fellows and research scientists to help modify the attentive sensing technology to operate in these domains. | ||
+ | |||
+ | 1. | ||
+ | 2. | ||
+ | 3. | ||
+ | |||
+ | ------------ | ||
+ | |||
+ | |||
+ | \\ | ||
+ | ====== Hunting for Bugs in Logging: applying JPF to log4j ====== | ||
+ | |||
+ | **Supervisor: | ||
+ | |||
+ | Description: | ||
+ | Java PathFinder (JPF) is a tool that can detect bugs in Java code. | ||
+ | The Java library Apache log4j allows developers to control which log | ||
+ | statements are output. | ||
+ | to detect bugs in log4j by means of JPF with very limited succes. | ||
+ | |||
+ | Recently, in collaboration with Shafiei (NASA) we have developed | ||
+ | an extension of JPF called jpf-nhandler. | ||
+ | is to apply this extension to log4j. | ||
+ | |||
+ | [1] David A. Dickey, B. Sinem Dorter, J. Michael German, Benjamin D. Madore, Mark W. Piper, Gabriel L. Zenarosa. " | ||
+ | |||
+ | **Required Background: | ||
+ | \\ | ||
+ | ------------ | ||
+ | \\ | ||
+ | |||
+ | |||
+ | |||
+ | |||
+ | |||
+ | |||
+ | ====== Mining Software Repositories Data====== | ||
+ | |||
+ | **Supervisor: | ||
+ | |||
+ | **Required Background: | ||
- | ====== Tandem repeat detection using spectral methods ====== | + | **Short Description: |
- | **Supervisor**: | + | \\ |
+ | ------------------ | ||
+ | \\ | ||
- | **Required Background**: | ||
- | **Recommended Background**: | ||
- | __Description__ | + | ======Model-based Design |
- | DNA sequences of organisms have many repeated substrings. These are called repeats in Biology, | + | |
- | Finding tandem repeats is an important problem in Computational Biology. The techniques that have been proposed for it fall into two classes: string matching algorithms and signal processing techniques. In this project, we will explore fast, accurate algorithms for detecting tandem repeats and evaluate the outputs of the algorithms studied by comparing their outputs with those of available packages, including mreps (http:// | + | **Supervisor:** Jia Xu |
- | The student will implement existing spectral algorithms based on Fourier Transforms and on an autoregressive model. He will then make changes suggested by the supervisor, and evaluate the effect of the modifications. Throughout the course, the student is required to maintain | + | **Required Background: |
+ | such as Arduino. | ||
+ | **Project Description: | ||
+ | Model-based design with code generation tools can be used for simulation, rapid prototyping, | ||
+ | \\ | ||
+ | ------------------ | ||
+ | \\ | ||
- | ---- | + | ======C2000 Concerto Microcontrollers====== |
- | : | + | |
- | ---- | + | |
- | ====== Touch- and Gesture-based Text Entry With Automatic Error Correction ====== | + | **Supervisor: |
- | **Supervisor**: Scott Mackenzie | + | **Required Background:** At least a B+ in Embedded Systems (CSE3215), |
+ | strong C programming skills, solid knowledge of microcontrollers | ||
- | **Required Background**: | + | **Description: |
- | CSE3461 (or equivalent), | + | two cores on a single-chip with on-chip low latency interprocessor communication between the two cores: a C28x 32-bit control core for |
- | A student wishing to do this project must be well versed in Java, Eclipse, | + | real-time control with faster/more loops and small sampling window; |
+ | and an ARM 32-bit Cortex-M3 host core for communications and general purpose. The selected student will evaluate | ||
+ | C2000 Concerto family of microcontrollers through testing and investigating open source software for real-time control applications | ||
+ | that runs on C2000 Concerto Microcontrollers. | ||
+ | \\ | ||
+ | ------------------ | ||
+ | \\ | ||
- | **Recommended Background**: | + | ======Real-Time Bidding Platform====== |
- | Possession of an Android touch-based phone or tablet would be an asset, but is not essential. | + | |
- | __Description__ | + | **Supervisor: |
- | This project involves extending a touch-based text entry method to include automatic error correction. | + | |
+ | **Required Background: | ||
+ | (CSE3221), strong Ubuntu/ | ||
+ | **Description: | ||
- | ---- | + | \\ |
- | : | + | ------------------ |
- | ---- | + | \\ |
- | ====== Early Breast Cancer Detection based on MRI’s. ====== | + | |
- | **Supervisor**: | + | ======Circuit and Board Design for a Pulsed Ground Penetrating Radar====== |
- | **Required Background**: General CSE408x prerequisites | + | **Supervisor:**Sebastian Magierowski |
- | **Recommended background**: Signal processing | + | **Description: |
- | Project Description: | + | **Required Background** A background in undergraduate-level electronics is very important. |
- | processing techniques for early detection of breast cancer using the available | + | |
- | modalities. In particular, we propose to develop time reversal beamforming imager, | + | |
- | based on our earlier work in time reversal signal processing, for detecting early stage | + | |
- | breast cancer tumours from MRI data. | + | |
- | Our preliminary work has illustrated the type of | + | |
- | results that are possible for breast cancer detection by applying time reversal signal | + | |
- | processing on MRI breast data. In this research, we propose to extend these results to | + | |
- | provide a quantitative understanding of the practical gains provided by time reversal | + | |
- | in MRI based breast cancer detection and its limitations. This will be accomplished | + | |
- | a local hospital, and running our algorithms on these datasets. The first step is | + | |
- | important to check the validity of our algorithms. The next step is to compare | + | |
- | estimated locations of the tumours (as derived with our algorithms) to their precise | + | |
- | locations as identified by the pathologists. The second step will quantify the accuracy | + | |
- | of our estimation algorithms. | + | |
- | ---- | + | \\ |
- | : | + | ------------------ |
- | ---- | + | \\ |
+ | More project proposals may be added here in the first week of the winter term. | ||
+ | \\ | ||
+ | ------------------ | ||
+ | \\ | ||
+ | \\ |
projects.txt · Last modified: 2016/01/13 20:05 by stevenc