projects
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projects [2012/09/03 21:05] – jonathan | projects [2015/08/11 20:40] – jarek | ||
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- | ====== | + | ====== |
- | (Listed in order received.) | + | \\ |
- | ====== Continuation | + | ===Genome-wide identification |
- | **Supervisor**: | ||
- | **Required Background**: General CSE408x prerequisites | + | Supervisor: Katalin Hudak |
+ | The Hudak Lab in the Biology Department has an opening for a fourth-year Honours student to assist with a bioinformatics project. We study the pokeweed plant, Phytolacca americana, which displays broad-spectrum virus resistance. To evaluate pokeweed gene expression, we recently sequenced the plant’s mRNA and small RNA transcriptomes under jasmonic acid (JA) treatment. JA is a plant hormone that mediates defence against pathogens and insect herbivores. We are interested in learning how pokeweed gene expression is regulated by miRNAs during biotic stress. | ||
- | **Recommended Background**: Java software development | + | Working with the support of a PhD student, your project will involve: |
+ | 1) Prediction of micro RNA (miRNA) targets on the basis of complementary sequence matches | ||
+ | 2) Correlation of miRNA and mRNA expression changes to identify genes that are regulated by miRNAs | ||
+ | 3) Conducting pathway analysis to determine which biological processes are controlled by miRNAs | ||
+ | 4) Construction of a miRNA/ | ||
+ | This work will contribute to a scientific manuscript on miRNA-mediated gene regulation in pokeweed during response to JA. | ||
- | Structural equation modeling (SEM) is a statistical technique that is becoming increasingly popular | + | Requirements: |
+ | 1) Pre-requisites as per EECS Calendar | ||
+ | 2) Facility with script-writing/ | ||
+ | 3) Preference for students with knowledge | ||
+ | 4) Able to begin in September 2015 | ||
- | The software | + | Learning outcomes: |
+ | 1) Manipulate and analyze quantitative biological data | ||
+ | 2) Develop and test hypotheses by modifying existing | ||
+ | 3) Manage a CentOS computer server | ||
- | To date a promising functional application has been developed in JAVA by a Computer Science student as a 4080 project. The existing software allows the user to draw a path diagram and outputs code for the R package sem. There are a number of improvements to be made (refinements and additions to graphical user interface) and then the application needs to be extended to output syntax appropriate for additional software | + | No knowledge of biology is required. |
+ | For more information, | ||
+ | Hudak Lab website- http:// | ||
+ | RNA sequencing- http:// | ||
+ | miRNAs- http://en.wikipedia.org/ | ||
- | More details {{: | ||
- | ====== YUsend Thermal Vacuum (TVAC) Test Manager ====== | ||
- | **Supervisor**: | ||
- | **Required Background**: | + | ===Dynamic Interface Detection |
- | **Description** The YUsend (York University Space Engineering Nanosatellite Demonstration) Lab has procured a Windows XP-based industrial computer and temperature acquisition card (as well as other hardware) for performing TVAC testing of nanosatellites in the CSIL Lab (PSE 003). A “TVAC Test Manager” application written using LabView' | + | **Supervisor: Michael Jenkin** |
- | Specific tasks include: 1. Writing temperature acquisition card (OMEGA Engineering CIO-DAS-Temp) drivers for LabView - should be written in Visual C++ or similar and compiled into SubVI format. 2. Write LabView VI's (“Virtual Instrument”) to perform (a) Test set-up activities - checkout of sensor and lamps, assigning neumonics to temperature sensors, setting of alarm conditions for sensors and lamps (b) Acquire and monitor temperature data and control lamp voltage during test, raise operator alarms for temperature or IR lamp anomalous conditions as required © Store temperature and control data for subsequent analysis and reporting. 3. (Optional) Interface the Test Manager with an orbital simulation tool which would be used to compute IR lamp inputs based on a simulation of the nanosatellite' | ||
+ | Contrary to most industries, fine chemical manufacturing is dominated by batch production methods. Increasing economic, environmental and safety pressures are motivating a turn towards continuous synthesis. Rather than making products in one big flask, continuous synthesis involves performing chemical reactions by flowing reagents through a tube. Working in this way provides more control over the reaction parameters leading to increases in product quality, and process efficiency and safety. The flow chemistry industry for fine chemical production is a relatively new but burgeoning field with a projected market capacity of billions of dollars by 2018. | ||
- | ====== Game Playing Framework | + | Extraction of the reaction mixture for purification and/or further processing is an important step in chemical manufacturing. This is a relatively straightforward operation in batch production, but offers several challenges for flowing processes. In order to facilitate continuous liquid extraction we require a sophisticated control system. This project involves designing, constructing and evaluating a pertinent practical problem in the field. |
- | **Supervisor**: | + | A key step in the process takes place in a clear tube that is mounted vertically. The tube contains two fluids with a boundary between them. During the process material flows into and out of the tube from the top and the bottom. Chemical reactions take place within this tube and It is essential that the position of the boundary be monitored as its position in the tube is used to control the flow of materials into the tube. |
- | **Required Background**: | + | One way of solving this problem is to float a marker at the boundary between the two liquids and to monitor this boundary using a video camera. Although this approach solves the problem, it requires the introduction of a specific float within the tube. Can we build a system that monitors the boundary without resorting to the use of an artificial float? |
- | **Description** Game playing frameworks in Eiffel such as Eiffelmedia usually wrap C frameworks in Eiffel. The goal of this project | + | Specific goals of the project |
- | ====== Numerical Methods ====== | + | - Develop a computer vision system that can detect and monitor the interface between two miscible fluids of different density. |
- | **Supervisor**: | + | - Evaluate the performance of the system over a range of different (and typical) fluids |
- | **Required Background**: | + | - Explore the use of different illuminant/ |
- | of Fortran, C or similar language. | + | |
- | **Description**: | + | The successful candidate(s) will have the experience of working with a diverse group of scientists and engineers toward the design and implementation of an automated liquid extraction device with applications across many industries. Upon successful prototyping, you will be able to interact with professionals in high-throughput manufacturing |
- | polynomial equations, with a view to comparing different known methods. | + | |
- | ====== Enabling SaaS access to an experimental AI planner ====== | + | For further information please contact, |
- | **Required Background**: | + | Michael Jenkin (jenkin@cse.yorku.ca) or Michal Organ (organ@yorku.ca) |
- | 3402 -- Functional & Logic Programming, | + | |
- | 3101 -- Design and Analysis of Algorithms, | + | |
- | 4302 -- Compilers and Interpreters. | + | |
- | **Description**: | + | \\ |
+ | ====== DDoS Attack using Google-bots ====== | ||
- | The components are various Unix executables and LISP programs that need to interact in complex ways. The components may be residing in different servers in different universities. Currently integration is performed manually, at the expense of usability. Thus, we aim at constructing a module that: (a) integrates involved components to deliver output in one call, (b) exports a unique web interface (preferably following WSDL/SOAP) to be easily accessed by custom front-end tools by anyone, anywhere, (c) offers a simple front-end for human users. | + | **Supervisor**: Ntalija Vlajic |
- | Learning objectives: | + | **Recommended Background**: CSE 3213 or CSE 3214, CSE 3482 |
- | | + | |
- | | + | |
- | | + | |
+ | Not long ago, botnets - networks of compromised computers - were seen as | ||
+ | the most effective (if not the only) means of conducting Distributed Denial | ||
+ | of Service (DDoS) attacks. However, with the growing popularity and prevalence | ||
+ | of application-layer over other types of DDoS attacks, the DDoS execution | ||
+ | landscape is becoming increasingly more diverse. An especially interesting | ||
+ | new trend is the execution of application-layer DDoS attacks by means of | ||
+ | skillfully manipulated Web-crawlers, | ||
+ | The goal of this project is to design, implement and test a real-world | ||
+ | framework consisting of the following: a) the attacker' | ||
+ | domain specially designed to attract Google-bots and then manipulate them | ||
+ | into generating attack traffic towards the target/ | ||
+ | victim' | ||
+ | component, the project will also look into the statistical/ | ||
+ | estimation of the framework' | ||
+ | to an actual (real-world) target/ | ||
+ | |||
+ | |||
+ | \\ | ||
+ | ====== Attentive Sensing for Better Two-Way Communication in Remote Learning Environments ====== | ||
+ | |||
+ | **Supervisor**: | ||
+ | |||
+ | **Required Background**: | ||
+ | good math skills, knowledge of C and MATLAB programming languages | ||
+ | |||
+ | One of the challenges in remote learning is to allow students to communicate effectively with the lecturer. | ||
+ | |||
+ | The goal of this project is to apply attentive sensing technology (www.elderlab.yorku.ca) to this problem. | ||
+ | |||
+ | In particular, working with a senior graduate student or postdoctoral fellow, the successful applicant will: | ||
+ | |||
+ | - Study the problem of detecting hand-raises in the preattentive sensor stream | ||
+ | - Implement algorithms for detecting hand-raises based upon this investigation | ||
+ | - Evaluate these algorithms in a real-classroom setting, using proprietary attentive sensing technology | ||
+ | |||
+ | |||
+ | ====== Attentive Sensing for Sport Video Recording Markets ====== | ||
+ | |||
+ | **Supervisor**: | ||
+ | |||
+ | **Required Background**: | ||
+ | |||
+ | |||
+ | The goal of this project is to modify York University’s patented attentive sensor technology to the sport video recording market. | ||
+ | |||
+ | The general problem is to use attentive sensing technology (www.elderlab.yorku.ca) to visually detect and track multiple moving agents (e.g., skiers, riders, horses) and to select specific agents for active high-resolution smooth pursuit. | ||
+ | |||
+ | The student will work with senior graduate students, postdoctoral fellows and research scientists to help modify the attentive sensing technology to operate in these domains. | ||
+ | |||
+ | 1. | ||
+ | 2. | ||
+ | 3. | ||
+ | |||
+ | ------------ | ||
+ | |||
+ | |||
+ | \\ | ||
+ | ====== Hunting for Bugs in Logging: applying JPF to log4j ====== | ||
+ | |||
+ | **Supervisor: | ||
+ | |||
+ | Description: | ||
+ | Java PathFinder (JPF) is a tool that can detect bugs in Java code. | ||
+ | The Java library Apache log4j allows developers to control which log | ||
+ | statements are output. | ||
+ | to detect bugs in log4j by means of JPF with very limited succes. | ||
+ | |||
+ | Recently, in collaboration with Shafiei (NASA) we have developed | ||
+ | an extension of JPF called jpf-nhandler. | ||
+ | is to apply this extension to log4j. | ||
+ | |||
+ | [1] David A. Dickey, B. Sinem Dorter, J. Michael German, Benjamin D. Madore, Mark W. Piper, Gabriel L. Zenarosa. " | ||
+ | |||
+ | **Required Background: | ||
+ | \\ | ||
+ | ------------ | ||
+ | \\ | ||
+ | |||
+ | |||
+ | |||
+ | |||
+ | |||
+ | |||
+ | ====== Mining Software Repositories Data====== | ||
+ | |||
+ | **Supervisor: | ||
+ | |||
+ | **Required Background: | ||
+ | |||
+ | **Short Description: | ||
+ | |||
+ | \\ | ||
+ | ------------------ | ||
+ | \\ | ||
+ | |||
+ | |||
+ | |||
+ | ======Model-based Design and Development of Embedded Systems with Code Generation Tools====== | ||
+ | |||
+ | **Supervisor: | ||
+ | |||
+ | **Required Background: | ||
+ | such as Arduino. | ||
+ | |||
+ | **Project Description: | ||
+ | |||
+ | Model-based design with code generation tools can be used for simulation, rapid prototyping, | ||
+ | |||
+ | \\ | ||
+ | ------------------ | ||
+ | \\ | ||
+ | |||
+ | ======C2000 Concerto Microcontrollers====== | ||
+ | |||
+ | **Supervisor: | ||
+ | |||
+ | **Required Background: | ||
+ | strong C programming skills, solid knowledge of microcontrollers | ||
+ | |||
+ | **Description: | ||
+ | two cores on a single-chip with on-chip low latency interprocessor communication between the two cores: a C28x 32-bit control core for | ||
+ | real-time control with faster/more loops and small sampling window; | ||
+ | and an ARM 32-bit Cortex-M3 host core for communications and general purpose. The selected student will evaluate the capabilities of the | ||
+ | C2000 Concerto family of microcontrollers through testing and investigating open source software for real-time control applications | ||
+ | that runs on C2000 Concerto Microcontrollers. | ||
+ | |||
+ | \\ | ||
+ | ------------------ | ||
+ | \\ | ||
+ | |||
+ | ======Real-Time Bidding Platform====== | ||
+ | |||
+ | **Supervisor: | ||
+ | |||
+ | **Required Background: | ||
+ | (CSE3221), strong Ubuntu/ | ||
+ | |||
+ | **Description: | ||
+ | |||
+ | \\ | ||
+ | ------------------ | ||
+ | \\ | ||
+ | |||
+ | ======Circuit and Board Design for a Pulsed Ground Penetrating Radar====== | ||
+ | |||
+ | **Supervisor: | ||
+ | |||
+ | **Description: | ||
+ | |||
+ | **Required Background** A background in undergraduate-level electronics is very important. | ||
+ | |||
+ | \\ | ||
+ | ------------------ | ||
+ | \\ | ||
+ | More project proposals may be added here in the first week of the winter term. | ||
+ | \\ | ||
+ | ------------------ | ||
+ | \\ | ||
+ | \\ |
projects.txt · Last modified: 2016/01/13 20:05 by stevenc