projects
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projects [2012/09/20 02:01] – jonathan | projects [2015/08/11 20:43] – jarek | ||
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- | ====== | + | ====== |
- | (Listed in order received.) | + | \\ |
- | ====== Continuation | + | ===Genome-wide identification |
- | **Supervisor**: | ||
- | **Required Background**: General CSE408x prerequisites | + | **Supervisor: Katalin Hudak** |
- | **Recommended Background**: | ||
- | Structural equation modeling | + | The Hudak Lab in the Biology Department has an opening for a fourth-year Honours student to assist with a bioinformatics project. We study the pokeweed plant, Phytolacca americana, which displays broad-spectrum virus resistance. To evaluate pokeweed gene expression, we recently sequenced the plant’s mRNA and small RNA transcriptomes under jasmonic acid (JA) treatment. JA is a plant hormone |
- | The software required is an application that allows researchers to define their hypothesized models visually and will output | + | Working with the support |
- | To date a promising functional application has been developed in JAVA by a Computer Science student as a 4080 project. The existing software allows the user to draw a path diagram and outputs code for the R package sem. There are a number | + | 1) Prediction |
- | More details {{: | + | 2) Correlation of miRNA and mRNA expression changes to identify genes that are regulated by miRNAs |
- | ====== YUsend Thermal Vacuum (TVAC) Test Manager ====== | + | 3) Conducting pathway analysis to determine which biological processes are controlled by miRNAs |
- | **Supervisor**: | + | 4) Construction of a miRNA/ |
+ | This work will contribute to a scientific manuscript on miRNA-mediated gene regulation in pokeweed during response to JA. | ||
- | **Required Background**: General CSE408x prerequisites, | + | Requirements: |
- | **Description** The YUsend (York University Space Engineering Nanosatellite Demonstration) Lab has procured a Windows XP-based industrial computer and temperature acquisition card (as well as other hardware) for performing TVAC testing of nanosatellites in the CSIL Lab (PSE 003). A “TVAC Test Manager” application written using LabView' | + | 1) Pre-requisites |
- | Specific tasks include: 1. Writing temperature acquisition card (OMEGA Engineering CIO-DAS-Temp) drivers for LabView - should be written in Visual C++ or similar and compiled into SubVI format. | + | 2) Facility with script-writing/ |
+ | 3) Preference for students with knowledge of statistics and familiarity with R programming | ||
- | ====== Game Playing Framework | + | 4) Able to begin in September 2015 |
- | NO LONGER AVAILABLE | + | Learning outcomes: |
- | **Supervisor**: | + | 1) Manipulate and analyze quantitative biological data |
- | **Required Background**: | + | 2) Develop and test hypotheses by modifying existing |
- | **Description** Game playing frameworks in Eiffel such as Eiffelmedia usually wrap C frameworks in Eiffel. The goal of this project is to develop (initially, a simple) framework using pure Eiffel/ | + | 3) Manage |
- | ====== Numerical Methods ====== | + | No knowledge of biology is required. |
- | **Supervisor**: Mike McNamee | + | For more information, |
+ | Hudak Lab website- http:// | ||
- | **Required Background**: Good grade in a Numerical Methods course and good knowledge | + | RNA sequencing- http://www.illumina.com/ |
- | of Fortran, C or similar language. | + | |
- | **Description**: Write, debug and run several Fortran programs related to solving | + | miRNAs- http://en.wikipedia.org/ |
- | polynomial equations, with a view to comparing different known methods. | + | |
- | ====== Enabling SaaS access to an experimental AI planner ====== | + | \\ |
- | **Supervisor**: | ||
- | **Required Background**: | + | ===Dynamic Interface Detection |
- | 3402 -- Functional & Logic Programming, | + | |
- | 3101 -- Design and Analysis of Algorithms, | + | |
- | 4302 -- Compilers and Interpreters. | + | |
- | **Description**: This project involves enriching and integrating a set of fairly complex scripts, which are components of an Artificial Intelligence (AI) planner, and exporting them to the public in a Software-as-a-Service (SaaS) fashion. | + | **Supervisor: Michael Jenkin** |
- | The components are various Unix executables and LISP programs that need to interact in complex ways. The components may be residing in different servers in different universities. Currently integration is performed manually, at the expense of usability. Thus, we aim at constructing a module that: (a) integrates involved components to deliver output in one call, (b) exports a unique web interface (preferably following WSDL/SOAP) to be easily accessed by custom front-end tools by anyone, anywhere, (c ) offers a simple front-end for human users. | ||
- | Learning objectives: | + | Contrary to most industries, fine chemical manufacturing is dominated by batch production methods. Increasing economic, environmental |
- | * Understand the technologies | + | |
- | * Study a state-of-the-art AI planner | + | |
- | * Exercise scripting skills. | + | |
+ | Extraction of the reaction mixture for purification and/or further processing is an important step in chemical manufacturing. This is a relatively straightforward operation in batch production, but offers several challenges for flowing processes. In order to facilitate continuous liquid extraction we require a sophisticated control system. This project involves designing, constructing and evaluating a pertinent practical problem in the field. | ||
- | ====== Predicting Angular Error in Rigid Registration ====== | + | A key step in the process takes place in a clear tube that is mounted vertically. The tube contains two fluids with a boundary between them. During the process material flows into and out of the tube from the top and the bottom. Chemical reactions take place within this tube and It is essential that the position of the boundary be monitored as its position in the tube is used to control the flow of materials into the tube. |
- | **Supervisor**: | + | One way of solving this problem is to float a marker at the boundary between the two liquids and to monitor this boundary using a video camera. Although this approach solves the problem, it requires the introduction of a specific float within the tube. Can we build a system that monitors the boundary without resorting to the use of an artificial float? |
- | **Description**: | + | Specific goals of the project |
- | navigation. Several (seemingly) different approaches for predicting | + | |
- | distance errors in registration are known, but for some surgical | + | |
- | procedures, | + | |
- | This project | + | |
- | error in registration; | + | |
- | simulated and actual registration data for testing purposes. | + | |
- | ====== Calibration of a Tracked Pointer ====== | + | - Develop |
- | **Supervisor**: | + | - Evaluate the performance of the system over a range of different (and typical) fluids |
- | **Description**: | + | - Explore |
- | navigation systems. A typical pointer has a tracked target on one | + | |
- | end and a sharp or ball tip on the other end. Finding the location | + | |
- | of the tip relative | + | |
- | solution to the calibration problem involves pivoting the pointer | + | |
- | about the tip while tracking the target; if the tip is kept | + | |
- | stationary, then the target moves on the surface of a sphere. | + | |
- | Fitting the tracking data to the surface of a sphere yields the | + | |
- | location of the tip as the sphere center. Unfortunately, | + | |
- | calibrated tip position obtained using such a spherical calibration | + | |
- | has high variance. This project will investigate how much variance | + | |
- | there is in the calibrated tip position, and methods | + | |
- | the variance of the calibrated tip position. | + | |
+ | The successful candidate(s) will have the experience of working with a diverse group of scientists and engineers toward the design and implementation of an automated liquid extraction device with applications across many industries. Upon successful prototyping, | ||
- | ====== A privacy safeguard framework for sharing photos on Facebook ====== | + | For further information please contact, |
- | **Supervisor**: | + | Michael Jenkin (jenkin@cse.yorku.ca) or Michal Organ (organ@yorku.ca) |
+ | |||
+ | \\ | ||
+ | ====== DDoS Attack using Google-bots ====== | ||
+ | |||
+ | **Supervisor**: | ||
+ | |||
+ | **Recommended Background**: | ||
+ | |||
+ | Not long ago, botnets - networks of compromised computers - were seen as | ||
+ | the most effective (if not the only) means of conducting Distributed Denial | ||
+ | of Service (DDoS) attacks. However, with the growing popularity and prevalence | ||
+ | of application-layer over other types of DDoS attacks, the DDoS execution | ||
+ | landscape is becoming increasingly more diverse. An especially interesting | ||
+ | new trend is the execution of application-layer DDoS attacks by means of | ||
+ | skillfully manipulated Web-crawlers, | ||
+ | The goal of this project is to design, implement and test a real-world | ||
+ | framework consisting of the following: a) the attacker' | ||
+ | domain specially designed to attract Google-bots and then manipulate them | ||
+ | into generating attack traffic towards the target/ | ||
+ | victim' | ||
+ | component, the project will also look into the statistical/ | ||
+ | estimation of the framework' | ||
+ | to an actual (real-world) target/ | ||
+ | |||
+ | |||
+ | |||
+ | |||
+ | \\ | ||
+ | ====== Attentive Sensing for Better Two-Way Communication in Remote Learning Environments ====== | ||
+ | |||
+ | **Supervisor**: | ||
+ | |||
+ | **Required Background**: | ||
+ | good math skills, knowledge of C and MATLAB programming languages | ||
+ | |||
+ | One of the challenges in remote learning is to allow students to communicate effectively with the lecturer. | ||
+ | The goal of this project is to apply attentive sensing technology (www.elderlab.yorku.ca) to this problem. | ||
+ | |||
+ | In particular, working with a senior graduate student or postdoctoral fellow, the successful applicant will: | ||
+ | |||
+ | - Study the problem of detecting hand-raises in the preattentive sensor stream | ||
+ | - Implement algorithms for detecting hand-raises based upon this investigation | ||
+ | - Evaluate these algorithms in a real-classroom setting, using proprietary attentive sensing technology | ||
+ | |||
+ | |||
+ | ====== Attentive Sensing for Sport Video Recording Markets ====== | ||
+ | |||
+ | **Supervisor**: | ||
+ | |||
+ | **Required Background**: | ||
+ | |||
+ | |||
+ | The goal of this project is to modify York University’s patented attentive sensor technology to the sport video recording market. | ||
+ | |||
+ | The general problem is to use attentive sensing technology (www.elderlab.yorku.ca) to visually detect and track multiple moving agents (e.g., skiers, riders, horses) and to select specific agents for active high-resolution smooth pursuit. | ||
+ | |||
+ | The student will work with senior graduate students, postdoctoral fellows and research scientists to help modify the attentive sensing technology to operate in these domains. | ||
+ | |||
+ | 1. | ||
+ | 2. | ||
+ | 3. | ||
+ | |||
+ | ------------ | ||
+ | |||
+ | |||
+ | \\ | ||
+ | ====== Hunting for Bugs in Logging: applying JPF to log4j ====== | ||
+ | |||
+ | **Supervisor: | ||
+ | |||
+ | Description: | ||
+ | Java PathFinder (JPF) is a tool that can detect bugs in Java code. | ||
+ | The Java library Apache log4j allows developers to control which log | ||
+ | statements are output. | ||
+ | to detect bugs in log4j by means of JPF with very limited succes. | ||
+ | |||
+ | Recently, in collaboration with Shafiei (NASA) we have developed | ||
+ | an extension of JPF called jpf-nhandler. | ||
+ | is to apply this extension to log4j. | ||
+ | |||
+ | [1] David A. Dickey, B. Sinem Dorter, J. Michael German, Benjamin D. Madore, Mark W. Piper, Gabriel L. Zenarosa. " | ||
+ | |||
+ | **Required Background: | ||
+ | \\ | ||
+ | ------------ | ||
+ | \\ | ||
+ | |||
+ | |||
+ | |||
+ | |||
+ | |||
+ | |||
+ | ====== Mining Software Repositories Data====== | ||
+ | |||
+ | **Supervisor: | ||
+ | |||
+ | **Required Background: | ||
+ | |||
+ | **Short Description: | ||
+ | |||
+ | \\ | ||
+ | ------------------ | ||
+ | \\ | ||
+ | |||
+ | |||
+ | |||
+ | ======Model-based Design and Development of Embedded Systems with Code Generation Tools====== | ||
+ | |||
+ | **Supervisor: | ||
+ | |||
+ | **Required Background: | ||
+ | such as Arduino. | ||
+ | |||
+ | **Project Description: | ||
+ | |||
+ | Model-based design with code generation tools can be used for simulation, rapid prototyping, | ||
+ | |||
+ | \\ | ||
+ | ------------------ | ||
+ | \\ | ||
+ | |||
+ | ======C2000 Concerto Microcontrollers====== | ||
+ | |||
+ | **Supervisor: | ||
+ | |||
+ | **Required Background: | ||
+ | strong C programming skills, solid knowledge of microcontrollers | ||
+ | |||
+ | **Description: | ||
+ | two cores on a single-chip with on-chip low latency interprocessor communication between the two cores: a C28x 32-bit control core for | ||
+ | real-time control with faster/more loops and small sampling window; | ||
+ | and an ARM 32-bit Cortex-M3 host core for communications and general purpose. The selected student will evaluate the capabilities of the | ||
+ | C2000 Concerto family of microcontrollers through testing and investigating open source software for real-time control applications | ||
+ | that runs on C2000 Concerto Microcontrollers. | ||
+ | |||
+ | \\ | ||
+ | ------------------ | ||
+ | \\ | ||
+ | |||
+ | ======Real-Time Bidding Platform====== | ||
+ | |||
+ | **Supervisor: | ||
+ | |||
+ | **Required Background: | ||
+ | (CSE3221), strong Ubuntu/ | ||
+ | |||
+ | **Description: | ||
+ | |||
+ | \\ | ||
+ | ------------------ | ||
+ | \\ | ||
+ | |||
+ | ======Circuit and Board Design for a Pulsed Ground Penetrating Radar====== | ||
+ | |||
+ | **Supervisor: | ||
- | **Description**: | + | **Description:** The project requires |
- | One of the major privacy concerns in Online Social Networks is photo sharing. | + | |
- | **Required | + | **Required |
- | **Desired prerequisite**: | + | \\ |
+ | ------------------ | ||
+ | \\ | ||
+ | More project proposals may be added here in the first week of the winter term. | ||
+ | \\ | ||
+ | ------------------ | ||
+ | \\ | ||
+ | \\ |
projects.txt · Last modified: 2016/01/13 20:05 by stevenc