1. Configure jret library
2. Download limsim.jar file
3. Include downloaded jar file in $CLASSPHAT environment variable
4. Run application using the following command

     java limsim.LimSim  -auth <decomposition> -mdg <MDG> -eval <evaluation distance> algorithm  algorithm algorithm [-loadConfig file] [-saveConfig File] [-saveConfigXsd configSchema] [-log logConfigFile] [-iter number]